Skip to content

Thoughtful research. Clearer manuscripts. More confident submissions.

From first draft to the next editorial decision.

Academic publishing involves a series of decisions, and each stage presents different questions. Knowing where you are in the process makes it easier to identify what needs attention.

This guide walks through the eight stages most manuscripts pass through, with the questions to ask, a practical checklist for each, and the terms editors use along the way.

Archive shelves stacked with labeled cardboard document boxes in ochre, green, and grey.
Fig. 1Every manuscript passes through stages; most of the hard work happens before submission.
  1. 01Preparing the manuscript

    Clarify the question, the methods, and the contribution before thinking about where it goes.

    Seen from above, a hand writing in a notebook on a wooden table beside coffee and a croissant.

    Checklist

    Questions to ask

  2. 02Selecting a journal

    Match the work to a credible venue’s scope, readers, article types, and policies.

    Checklist

    Questions to ask

  3. 03Preparing a submission

    Meet the journal’s author guidelines, declarations, and file requirements in full.

    Checklist

    Questions to ask

  4. 04Understanding peer review

    Know what happens after submission, and how to read what comes back.

    Checklist

    Questions to ask

  5. 05Revising the manuscript

    Plan the revision before writing it, and keep the manuscript and the record aligned.

    A hand-drawn goal review chart tracking writing sessions and articles published, with a red pen.

    Checklist

    Questions to ask

  6. 06Responding to reviewers

    Answer every point directly, with evidence, and describe only changes that exist.

    Checklist

    Questions to ask

    Where support can help

  7. 07Resubmitting

    Confirm the revised files, declarations, and letter are complete and consistent.

    A tall stack of printed documents marked with dozens of pink, orange, yellow and green sticky tabs.

    Checklist

    Questions to ask

  8. 08Understanding acceptance, rejection, and what follows

    Read each decision for what it says, and plan the next step from there.

    Checklist

    Questions to ask

The terms editors use

Author guidelines
A journal’s instructions for authors: scope, article types, formatting, references, declarations, and submission steps.
Desk rejection
A decision made by the editor before peer review, often because the manuscript is outside the journal’s scope or does not meet basic requirements.
Peer review
Evaluation of a manuscript by independent experts, whose reports inform the editor’s decision.
Single- and double-anonymized review
In single-anonymized review, reviewers know the authors’ identities but not vice versa; in double-anonymized review, neither side knows the other’s.
Minor revision
The editor will likely accept the manuscript once relatively small changes are made. It is still not an acceptance.
Major revision
Substantial changes are required, and the revised manuscript is usually reviewed again.
Revise and resubmit
The manuscript is not accepted in its current form, but the editor invites a substantially revised version. Terminology varies between journals.
Reject and resubmit
Used by some journals when they reject the current manuscript but would consider a new submission after major changes.
Response letter
The authors’ point-by-point reply to the editor and reviewers, explaining each change or the reason a suggestion was not adopted.
Response matrix
A table form of the response letter linking each comment to the response, the change made, and its location.
Cover letter
A short letter to the editor accompanying a submission, introducing the work and its fit for the journal.
Reporting guideline
A checklist of what to report for a particular study design, such as CONSORT for randomized trials or PRISMA for systematic reviews.
Article processing charge (APC)
A fee some journals charge, usually on acceptance, to publish an article open access.
Indexing
Inclusion of a journal in a bibliographic database such as Scopus or Web of Science. Status can change and should be verified at the source.
Preprint
A version of a manuscript shared publicly before peer review. Journals’ policies on preprints differ.
DOI
Digital Object Identifier: a persistent identifier for a published item, registered through agencies such as Crossref.
ORCID iD
A persistent identifier for researchers, which many journals ask authors to provide at submission.
Proofs
The typeset version of an accepted article, sent to authors to check for errors before publication.
Version of record
The final, published version of an article as it appears in the journal.

Know where you are? Let’s look at what comes next.